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The @saleae Logic 2 software is really nice, but the remote control API didn't have an obvious way to just start a capture using the current settings. Fortunately you can do it yourself by using a GUI automation tool to poke at the right part of its guts: https://gist.github.com/cibomahto/3c47e7b06622aad732cbea4ac11900c4
Logic 1 does support this, but I'd much rather use 2 these days.